This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001HH39.1

Japan/LOC_001HH39.1/2024-10-17
J. Tachikawa & A. Saitoh

Pediatrics; 1-757 Asahimachi-dori, Chuo-ku, Niigata, Niigata 951-8510

Sample details

Collection date
2024-10-17
Earliest release date
2026-04-02
Sampling location
Japan (Niigata)
Isolate name
NiigataB39_WWTP-2

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-04-03 04:18insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2026-04-02
NCBI update date
2026-04-02
INSDC accession

Host

Host

Submission details

Submission ID
LC870075.1
Submitting group
Date submitted
2026-04-03 04:18:43 UTC
Date released
2026-04-03 04:19:01 UTC

Clade

Clade EV-D68
A2/D

Genotype

Genotype
EV-D68

Alignment and QC

Total SNPs
53
Total deleted nucs
3
Length
349 (4.78%)
Variant
False

Nucleotide mutations

Mutations called relative to the AY426531.1 reference

Substitutions

  • T2517A
  • C2525G
  • A2544G
  • A2565G
  • A2568G
  • G2589T
  • G2592A
  • G2595A
  • T2613C
  • G2614A
  • T2616C
  • C2626T
  • G2631A
  • G2637T
  • A2639G
  • G2655A
  • T2661C
  • G2662A
Deletions

2806-2808
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the AY426531.1 reference

Substitutions

VP1

  • VP1:T46S
  • VP1:G76S
  • VP1:K83N
  • VP1:K84R
  • VP1:A92T
  • VP1:S95G
  • VP1:A96E
  • VP1:G97R
  • VP1:T98I
  • VP1:H99D
  • VP1:F103Y
  • VP1:N142S
  • VP1:D144N
  • VP1:M148T
Deletions

VP1

VP1:140
Insertions
N/A

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